SANTA CLARA — Already challenged in terms of a pass rush, the 49ers got some bad news Monday when it was learned Bryce Huff came out of a 20-10 win over Atlanta with a hamstring strain and will likely miss at least two games.

Huff played 45 snaps against the Falcons and 69.2 percent of the plays. Both are his high-water marks for the season. But toward the end of the game, Huff apparently felt something was amiss.

“I was told it was right at the end,” Shanahan said in a conference call with local reporters. “I was told he felt it on the last two plays.”

Having lost their top edge rusher in Nick Bosa to a torn ACL on Sept. 14, the 49ers are 25th in the NFL with 14 sacks. Huff leads the 49ers with four and also leads in quarterback hits with six.

Acquired from the Philadelphia Eagles aft

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